Shabudin Yahaya from the ruling Barisan Nasional coalition said marriage could help victims "lead a better life".
Malaysia, a Muslim-majority country, has just passed a new law on sexual offences against children.
Despite opposition efforts, the law does not ban child marriages.
It remains legal for Muslims under 16 to get married in Malaysia under certain circumstances.
Speaking during a parliamentary debate on the bill on Tuesday, Mr Shabudin said that although rape was considered a criminal offence, the rapist and the victim should both be "given a second chance to turn a new leaf".
"Perhaps through marriage they [the rape victim and rapist] can lead a healthier, better life. And the person who was raped will not necessarily have a bleak future.
"She will have a husband at least, and this could serve as a remedy to growing social problems," he said.
He also said some children were "physically and spiritually" ready for marriage.
"Some girls who are aged between 12 and 15 years have bodies like 18-year-old women," he said, citing his experience as a former Sharia court judge.
He later said his comments had been taken out of context, but that he opposed criminalising child marriages as they are a part of Islamic law, Reuters reports.
In Malaysia, there has been an increasing emphasis on strict Islamic codes of conduct in recent years.
Sharmila Sekaran, chair of the Malaysia's Voice of the Children NGO, said the politician's words represented a "worrying trend" for young girls.
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